Alevin is a tool — integrated with the salmon software — that introduces a family of algorithms for quantification and analysis of 3' tagged-end single-cell ...

27 мар. 2019 г. · We introduce alevin, a fast end-to-end pipeline to process droplet-based single-cell RNA sequencing data, performing cell barcode detection, read mapping, ...

Alevin is a tool integrated with the salmon software that introduces a family of algorithms for quantification and analysis of 3' tagged-end single-cell ...

8 дек. 2023 г. · This tutorial is part of Single-cell RNA-seq: Case Study series and focuses on generating a single cell matrix using Alevin (Srivastava et al. 2019) in the ...

alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding ...

20 апр. 2020 г. · In this tutorial we generate the gene-count (RNA), adt-count (protein) and hto-count (sample hashing) matrices for each cell using alevin.

Generate a cellxgene matrix for droplet-based single cell sequencing data. Interpret quality control (QC) plots to make informed decisions on cell thresholds.

3 дек. 2023 г. · In this blog post, I will walk you through the pre-processing steps from fastq files to the count matrix for the RNA and the protein (antibody derived tag/ADT ...

Alevin is a tool for estimating gene abundances in droplet-based single-cell dscRNA-seq data. The Alevin tool is included in the Salmon package.

Function to read the binary output of salmon alevin in R (single-cell RNA-seq) - readSalmonAlevin.R.