This end-to-end tutorial will guide you through every step of ATAC-seq data analysis. We'll show you how to set up your computing environment, fetch the raw ...

ATAC-seq (Assay for Transposase-Accessible Chromatin with high-throughput sequencing) is a method for determining chromatin accessibility across the genome.

In this tutorial we will analyze the ATAC-Seq data from this publication. The manuscript investigates the chromatin accessibility landscape of 13 human primary ...

3 февр. 2020 г. · Here, we discuss the major steps in ATAC-seq data analysis, including pre-analysis (quality check and alignment), core analysis (peak calling), and advanced ...

2 сент. 2019 г. · ATAC-Seq is a method to investigate the chromatin accessibility and the genome is treated with a transposase (enzyme) called Tn5. It marks open ... When working with real data · Get Data · Call Peaks

In this tutorial, we will work through the ATAC-seq dataset. Check the methods section in the paper for more details on the ATAC-seq library preparation.

ATAC-Seq is a method to investigate the accessibility of chromatin and thus a method to determine regulatory mechanisms of gene expression.

20 авг. 2024 г. · For this tutorial, we will be analyzing a single-cell ATAC-seq dataset of human peripheral blood mononuclear cells (PBMCs) provided by 10x Genomics. Motif analysis · Adult mouse brain · Visualization of genomic regions

Four major steps are listed, including pre-analysis, core analysis, advanced analysis, and integration with multiomics data. Pre-analyses include pre-alignment ...

This document is intended to provide a step-by-step walkthrough for the Bio-Rad ATAC-Seq Analysis Toolkit using an example dataset . We display all commands ...