Map (liftover) your data's coordinates to the current assembly. Tool, 50MB, Documentation · ID History Converter, Convert a set of Ensembl IDs from a previous ... Variant Effect Predictor · BLAST/BLAT search · Data formats · VEP web interface

This online tool currently uses CrossMap, which supports a limited number of formats (see our online documentation for details of the individual data ...

Lift over variants, positions, or intervals from one reference genome to another.

This tool converts genome coordinates and annotation files from the original to the new assembly using an alignment. Genome Browser User's Guide · Genome Browser FAQ

27 апр. 2021 г. · I converted some hg19 regions to hg38 using UCSC LiftOver and CrossMap ( on Ensembl). For some regions, I found different strand in the output. Tool:Converting Genome Coordinates From One ... - Biostars liftover chain files for mouse mm9 to ensembl version 75 Alternatives To Liftover - Biostars Liftover GRCh37 to hg38 1kg/GATK. - Biostars Другие результаты с сайта www.biostars.org

There is also an online version of the tool available. Both UCSC (liftOver) and NCBI (Remap) also provide tools for converting data between assemblies.

Here we present BCFtools/liftover, a tool to convert genomic coordinates across genome assemblies for variants encoded in the variant call format with improved ...

List the functional classifications of gene models that Ensembl associates with a particular species. Useful for restricting the type of genes/transcripts ... GET sequence/id/:id · GET sequence/region/:species · GET info/species

Assembly Converter: Ensembl also offers their own simple web interface for coordinate conversions called the Assembly Converter. rtracklayer: For R users, ...

5 мая 2017 г. · In lifting over, equivalent regions of the two assemblies are identifed, enabling coordinates in one assembly to be mapped to the other. The ...