27 апр. 2021 г. · I converted some hg19 regions to hg38 using UCSC LiftOver and CrossMap ( on Ensembl). For some regions, I found different strand in the output.

2 мар. 2013 г. · This tool adjusts the coordinates of variants within a VCF file to match a new reference. The tool is based on the UCSC liftOver and uses a UCSC ...

25 янв. 2016 г. · I am trying to make a chain file between corresponding versions of mouse genome in ensembl and ucsc (mm9 in particular). Grcm38 is not human (it is GRch38)

11 нояб. 2011 г. · In my experience with LiftOver, I have only had about an 80% success rate with translating chromosomal positions between reference genomes. The ...

5 февр. 2020 г. · Hello everyone! I got a quite tricky task to liftover SNPs from NCBI assembly to ENSEMBL assembly. The assemblies are different i.e. the ...

1 нояб. 2019 г. · I have an input bed file of around 700,000 SNPs that I have used for NCBI remap, ENSEMBL Assembly Converter, and Liftover (UCSC). These websites ...

5 окт. 2023 г. · chain.gz file contains the liftOver data needed to convert hg15 (Human Build 33) coordinates to hg16 (Human Build 34).

28 окт. 2022 г. · I have a list of coordinates for the ChIP-seq peaks from the ENSEMBL genome assembly hg38, but I need to translate these coordinates into supported hg38 in ...

9 янв. 2019 г. · I would like to know how can I obtain coordinates from one assembly to another, say GRCh38 to GRCh37, using MySQL connection to ensembldb.

15 сент. 2023 г. · I need to liftover a few variants from GRCh37 to hg38 1kg/GATK. UCSC lifover does not have this reference genome version available. I have tried ...