22 мар. 2023 г. · As a rule of thumb, everything between -500bp and 100bp around a transcription start site is typically considered the promoter region. For ...

27 апр. 2010 г. · Select the gene track of interest. Then, select "sequence" for output option. Click "get output". On the next page, select "genomic" and click ...

7 июн. 2023 г. · I'd probably select the genes of interest from your bulk RNA-seq results then use the UCSC table browser to get the sequence upstream of the transcription ...

20 февр. 2015 г. · To get the TSS, you'll want the seq_region_start of positive strand genes or the seq_region_end of negative strand genes, then you can ± 1000 ...

20 мар. 2019 г. · To find a promoter in IGV just go to the transcript start site of your gene and pick the region x kb upstream.

28 авг. 2013 г. · I want to find some upstream regulatory motifs shared commonly in my genes. The case is that the upstream regions of my genes do not often show ...

15 июн. 2020 г. · Hi there,. I'm right now working with Brassica napus, and would like to extract promoter sequence of certain genes on Linux platform.

30 окт. 2021 г. · Basically promoter means up stream of the TSS, and TSS is the annotated start of each transcript. Hence, get start coordinates per transcript.

24 мар. 2011 г. · Through the web interface you can easily retrieve a FASTA file with the 5' flanking sequence of every annotated gene. If you have an annotated ...

8 февр. 2012 г. · I would like to know how to use Bedtools to extract promoter sequences (as FASTAs) from the mouse genome (mm9) starting from a BED file.