Citations. The mlst software incorporates components of the PubMLST database which must be cited in any publications that use mlst : "This publication made use ... Issues 43 · Pull requests 2 · Gitignore · Actions

This application is for taking MLST databases from multiple locations and consolidating them in one place so that they can be easily used (and kept up to date).

We have developed pyMLST to perform this task. Unlike other tools, it uses a local SQLite database to store allele sequences and MLST profiles. This allows the ...

id: Scan contig files against PubMLST typing schemes - mlst/bin/mlst at master · tseemann/mlst.

Singularity container for Torsten Seemann's MLST. Pre-requisite Install Singularity Usage Latest version The following steps are needed to use the image.

stringMLST is a tool for detecting the MLST of an isolate directly from the genome sequencing reads. stringMLST predicts the ST of an isolate in a completely ...

This project loads typing databases which have been collected using the CGPS Typing scripts. These scripts download data from a variety of sources and reformat ...

FastMLST is a high speed standalone script wrote in Python3, which takes assemblies in FASTA format (gzipped is also allowed) and determines its ST according ...

To install a new MLST scheme you will have to find the location that the MLST tool is installed using conda by Galaxy. By default, the Galaxy version of conda ...

id: Scan contig files against PubMLST typing schemes - mlst/db/scheme_species_map.tab at master · tseemann/mlst.