CABS-dock treats peptide backbone as fully flexible, while the flexibility of receptor proteins is limited to near-native backbone fluctuations.

HADDOCKing of the p53 N-terminal peptide to MDM2: This tutorial introduces protein-peptide docking using the HADDOCK web server. It also introduces the ...

9 мая 2018 г. · HPEPDOCK is a novel web server for blind protein–peptide docking through a hierarchical algorithm. Instead of running lengthy simulations to ... Abstract · MATERIALS AND METHODS · RESULTS

FlexPepDock is a high-resolution peptide-protein docking (refinement) protocol for the modeling of peptide-protein complexes, implemented in the Rosetta ...

Starting from a peptide sequence and a protein receptor structure, the MDockPeP Server globally docks the all-atom, flexible peptide to the protein receptor.

HPEPDOCK: a web server for blind peptide-protein docking based on a hierarchical algorithm. ... Hierarchical Flexible Peptide Docking by Conformer Generation and ...

23 апр. 2020 г. · Similar to the global docking in the HPEPDOCK server, the pepATTRACT server merely requires the unbound structures and peptide sequences.

2 июл. 2018 г. · HPEPDOCK is a novel web server for blind protein-peptide docking through a hierarchical algorithm. Instead of running lengthy simulations to ...

24 февр. 2017 г. · Here we present a Axtarish server for pepATTRACT, carrying out only the rigid-body stage of the protocol, performing docking runs in about 10 minutes ...

23 окт. 2018 г. · We present a user-friendly protein–peptide docking server, MDockPeP. Starting from a peptide sequence and a protein receptor structure, the MDockPeP Server ...