This R package is for analysis, visualization and automatic estimation of large-scale (chromosomoal and arm-level) CNVs from RNA-seq data.

29 мар. 2022 г. · RNAseqCNV provides a method to robustly identify copy number alterations in the absence of DNA-based analyses, further enhancing the utility of RNA-seq to ...

RNAseqCNV – analysis of large-scale copy number variations from RNA-seq data. Transcriptome sequencing (RNA-seq) is widely used to detect gene rearrangements ...

26 сент. 2017 г. · CONICSmat is an R package that can be used to identify CNVs in single cell RNA-seq data from a gene expression table, without the need of an explicit normal ... correlating focal CNV values with RNA-seq expression - Biostars Copy number variation using HTSeq/DESeq2 - Biostars CNV Analysis for single bulk RNA-Seq Sample - Biostars Другие результаты с сайта www.biostars.org

1 мар. 2024 г. · Has anyone had any experience with tools for CNV calling for bulk RNA-Seq data? Which ones are more user friendly?

3 янв. 2020 г. · For example, RNA-seq data have been used to identify single nucleotide polymorphisms (SNPs) and short indels. Identification of these variants ...

22 окт. 2024 г. · CNV information inferred from RNA-seq can be highly informative to guide disease classification and risk stratification in ALL due to the high ...

Detecting CNAs from RNA-Seq is a challenging task because coverage is highly variable owing to differences in gene expression. Recently, several methods have ...

Integration views · CNV RNA-Seq expression view shows a single chart, for each gene, comparing Gene Expression (RPKM) vs Average Copy Number Log2 Ratio.

Inferring CNV from Single-Cell RNA-Seq. Contribute to broadinstitute/infercnv development by creating an account on GitHub. Wiki · Issues 207 · Pull requests 4 · Actions