24 июн. 2016 г. · This tutorial will introduce you the main steps required for predicting the bound structure of two interacting proteins starting from the unbound structures.

17 июл. 2017 г. · RosettaDock is a Monte Carlo (MC) based multi-scale docking algorithm that incorporates both a low-resolution, centroid-mode, coarse-grain stage ...

Preparing the XML file for Rosetta Scripts. Using Rosetta Scripts, we can mimic the protein-‐protein docking protocol. a. The skeleton structure XLM script ...

Продолжительность: 42:16
Опубликовано: 25 авг. 2020 г.

9 февр. 2024 г. · In this work, we combine AlphaFold as a structural template generator with a physics-based replica exchange docking algorithm.

RosettaDock is a structure-prediction-based program, which searches the rigid-body and side-chain conformational space of two interacting proteins to find a ...

assessment of protein-interface modeling suggests improvements to design methodology. Journal of molecular biology 2011, 414 (2), 289-302.

21 дек. 2022 г. · Structure prediction with covalent labeling data. RosettaDock has had many successes in modeling quaternary protein structure. And its docking ...

Protein–protein docking is the prediction of a complex structure starting from its monomer components. The search space can be extremely large, ...

25 нояб. 2023 г. · In this work, we combine AlphaFold as a structural template generator with a physics-based replica exchange docking algorithm.