20 авг. 2024 г. · For this tutorial, we will be analyzing a single-cell ATAC-seq dataset of human peripheral blood mononuclear cells (PBMCs) provided by 10x Genomics.

This tutorial demonstrates the principle behind the analysis of spatially resolvable single-cell ATACseq data.

Продолжительность: 45:11
Опубликовано: 9 апр. 2024 г.

11 июл. 2024 г. · In this tutorial we will analyze scATAC-seq data using the tool suites SnapATAC2 (Zhang et al. 2024) and Scanpy (Wolf et al. 2018). Creating a fragment file · Calculate and visualize QC...

Chapter 21 scATAC-seq ; 21.1 Single-Cell ATAC-seq Technique ; 21.2 Single-Cell ATAC-seq Pre-Processing and QC ; 21.4 scATAC-seq Downstream Analyses and scRNA-seq ...

These tutorials is to help users familiarize themselves with the analysis steps for processing ATAC-seq data including considerations for single-end, paired- ...

Single-cell RNA-seq and ATAC-seq integration. Information on joint gene expression and open chromatin profiling can be found here.

24 апр. 2023 г. · The tutorial is structured into four parts. The first part deals with the preprocessing of FASTQ files, quality control and mapping.

The primary goal of single-cell ATAC-seq is to obtain a high-resolution map of chromatin accessibility at the single-cell level.

In the following sections, we will guide you through a standard workflow for analyzing scATAC-seq data. ... Comprehensive analysis of single cell ATAC-seq data ...