18 нояб. 2021 г. · SuperFreq offers an integrated platform for identification of CNAs and point mutations. As evidence of how SuperFreq can be applied, we used it ...

We have adapted SuperFreq to call absolute and allele sensitive CNAs from RNA-Seq. SuperFreq uses an error-propagation framework to combine and maximize ...

SuperFreq analyses and filters somatic SNVs and short indels, calls copy numbers and tracks clones over multiple samples from the same individual.

1 июн. 2020 г. · SuperFreq offers an integrated platform for identification of CNAs and point mutations from RNA-seq in cancer transcriptomes.

26 июл. 2023 г. · I have run superFreq on a couple of samples from gallbladder tissues along with OCUG and NOZ cell-line which have ERBB2 amplifications.

SuperFreq offers an integrated platform for identification of CNAs and point mutations. As evidence of how SuperFreq can be applied, we used it to reproduce the ...

16 июн. 2021 г. · SuperFreq uses an error-propagation framework to combine and maximize information from read counts and B-allele frequencies. Results: We used ...

We have developed SuperFreq, an analysis framework purpose built for the detection of intra-tumoural heterogeneity and clonal evolution.

This repository contains the tools to deploy the superFreq R pipeline in the cloud. Briefly, superFreq is a tool by Flanserburg et al.

1 июн. 2020 г. · SuperFreq uses an error-propagation framework to combine and maximise the information available in the read depth and B-allele frequencies of ...