15 июн. 2016 г. · A major difference between ZRANK and ZRANK2 is that ZRANK2 has a harder repulsive term, which makes it more sensitive for models without ...

ZRANK: A docking refinement program developed to provide fast and accurate rescoring of models from initial-stage docking (e.g. from ZDOCK), as well as refined ...

TRScore is a scoring method for protein-protein docking, which combined 3D convolutional ResNet and physicochemical features of protein atoms.

22 окт. 2024 г. · ZRANK2 [18], an extension of ZRANK [25] , calculates a linear weighted sum of energy terms representing van der Waals energy, electrostatics ...

15 июн. 2016 г. · ProQDock performed better than the state-of-the-art methods ZRANK and ZRANK2 in terms of correlations, ranking and finding correct models on ...

ZRANK2 is a hybrid scoring method that combines force field-based energy terms used in ZRANK with a knowledge-based scoring function: IFACE (Mintseris et al., ...

PepVis tool is a python based GUI pipeline which can be used to model and prepare large-scale peptide structure from the sequence and also to perform ...

4 янв. 2024 г. · The refined structures are then scored using the zrank2 scoring function, and the one with the lowest score is chosen as the final prediction.

ZRANK2 (Pierce and Weng, 2008) further improves the scoring performance by optimizing certain energy terms used in ZRANK. In addition to physicsbased approaches ...

... ZRank2 in terms of correlations, ranking and finding correct models on an independent test set. Motivation: Protein–protein interactions are a key in ...